338

23

Regulatory Networks

Schuster S, Kholodenko BN, Westerhoff HV (2000) cellular information transfer regarded from a

stoichiometry and control analysis perspective. Biosystems 55:73–81

Shlomi T, Cabili MN, Herrgård MJ, Palsson BØ, Ruppin E (2008) Network-based prediction of

human tissue-specific metabolism. Nat Biotechnol 26:1003–1010

Stanton BC, Nielsen AAK, Tamsir A, Clancy K, Peterson T, Voigt CA (2014) Genomic mining of

prokaryotic repressors for orthogonal logic gates. Nat Chem Biol 10:99–105

Theorell A, Stelling J (2022) Metabolic networks, microbial consortia, and analogies to smart grids.

Proc IEEE 110:541–556

Tkemaladze N (2002) On the problems of an automated system of pattern recognition with learning.

J Biol Phys Chem 2:80–84

Tomkins GM (1975) The metabolic code. Science 189:760–763

Vohradský J (2001) Neural network model of gene expression. FASEB J 15:846–854

Voigt CC, Matt F (2004) Nitrogen stress causes unpredictable enrichments of 15N in two nectar-

feeding bat species. J Exp Biol 207:1741–1748

Vu TT, Vohradský J (2007) Nonlinear differential equation model for quantification of transcrip-

tional regulation applied to microarray data of Saccharomyces cerevisiae. Nucleic Acids Res

35:279–287

Wagner A, Fell DA (2001) The small world inside large metabolic networks. Proc R Soc Lond B

268:1803–1810

Wang B, Kitney RI, Joly N, Buck M (2011) Engineering modular and orthogonal genetic logic

gates for robust digital-like synthetic biology. Nat Commun 2:508

Wilson CJ et al (2018) Biomolecular assemblies: moving from observation to predictive design.

Chem Rev 118:11590–11574

Wolkenhauer O, Ullah M, Wellstead P, Cho K-H (2005) The dynamic systems approach to control

and regulation of intracellular networks. FEBS Lett 579:1846–1853

Yahyanejad F, Albert R, DasGupta B (2019) A survey of some tensor analysis techniques for

biological systems. Quant Biol 7:266–277

Zhang Z, Luo Y, Hu S, Li X, Wang L, Zhao B (2020) A novel method to protect essential proteins

based on tensor and HITS algorithm. Hum Genomics 14:14